GgaEX1020916 @ galGal3
Exon Skipping
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:705424-706043:+
Coord C1 exon
chr17:705424-705542
Coord A exon
chr17:705623-705779
Coord C2 exon
chr17:705979-706043
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAGCTCGTGTTCTGTTTCAGGTG
3' ss Score
10.16
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GCGTGTTCTACAACTCCTCTGGCTCAGCGCAGTGCTATGATGTGTACCGACTGTACCGGCCCTGCGCCGACCCCACGGGCTGCGGCACCGGCGCGGATGCTGAGGCCTGGGACTACCAG
Seq A exon
GTGTGTACCGAGATCAACTTAACTTTCAACAGCAACAACGTGACAGACATGTTCCCTGAGATGCCCTTCACAGAGGCCATGAGAGAGCAGTACTGTTGGAGCCGATGGCGCGTGAGGCCGCGAGCGCAGTGGCTGCGGATCAACTTCTGGGGAGGAG
Seq C2 exon
ACCTGAAAAGTGCAAGCAACATCATCTTTTCAAATGGAGACTTGGACCCGTGGGCTGGAGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105-'12-15,'12-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(9.1=100)
A:
PF055777=Peptidase_S28=FE(12.1=100)
C2:
PF055777=Peptidase_S28=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTCTACAACTCCTCTGGC
R:
CACGGGTCCAAGTCTCCATTT
Band lengths:
170-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]