MmuEX0015606 @ mm9
Exon Skipping
Gene
ENSMUSG00000026958 | Dpp7
Description
dipeptidylpeptidase 7 [Source:MGI Symbol;Acc:MGI:1933213]
Coordinates
chr2:25208673-25209813:-
Coord C1 exon
chr2:25209753-25209813
Coord A exon
chr2:25208880-25209036
Coord C2 exon
chr2:25208673-25208737
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTACTGTGGGGCACCTACAGGCC
3' ss Score
5.01
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
Exon sequences
Seq C1 exon
GTGGGCTGTCAACGGCTGTTGAATGAGGGCCAGAGGATCATGGGTCTACGGGCACTGGCAG
Seq A exon
GCCTGTACGGAGATCAATCTGACCTTTGACAGCAACAATGTGACAGACATGTTTCCTGAAATCCCATTCTCTGAAGAACTCCGCCAGCAATACTGTCTGGATACATGGGGCGTGTGGCCTCGGCAAGACTGGCTGCAGACCAGCTTCTGGGGTGGTG
Seq C2 exon
ACCTTAAAGCAGCCAGCAACATCATTTTCTCCAACGGTGACCTAGACCCCTGGGCAGGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026958_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(4.7=100)
A:
PF055777=Peptidase_S28=FE(12.1=100)
C2:
PF055777=Peptidase_S28=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGCTGTTGAATGAGGGC
R:
CTGCCCAGGGGTCTAGGTC
Band lengths:
108-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: