HsaEX0020850 @ hg38
Exon Skipping
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr9:137111690-137112604:-
Coord C1 exon
chr9:137112112-137112604
Coord A exon
chr9:137111873-137112029
Coord C2 exon
chr9:137111690-137111754
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCAGGCTGGGGCACCTGCAGGCC
3' ss Score
2.52
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GACCTTCCCAGAAACCCTGGGGGAGGCAGGGGCCGTCCCTGGGGACCCTCTCAGCACTGGCTGTAGCCAGGCCCAGCTTGGTGGGTGCTGCCCAAGGGGCCCCTGGGGTCCCCAGCATGGAGGGCAACAGAGGGCAGCAGGCCCCACCCTGCCCCGTGGAGAGCGGGGGGGCCCTCAACAGTCAGGCCCGGGGCTGGCAGCACAGACACCGCCGACCTCCAAGCAGGTAGCCTGGAGGGCCTTCCTCACTGGGACCTACAGATCCCAGAGCCCCAGATCCCCTGCAGGACCATTCCGAGGGGGGACAGGTTGGTGGCCGGAGCCCGCGGTGTGTCTGTGTGTGGCCGCTGGGCCCCAGCGCCTCTCCTCCCCAGGGCTGGTCTACAACGCCTCGGGCTCCGAGCACTGCTACGACATCTACCGGCTCTACCACAGCTGTGCTGACCCCACTGGCTGCGGCACCGGCCCCGACGCCAGGGCCTGGGACTACCAG
Seq A exon
GCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGACCTGCCCTTCACTGACGAGCTCCGCCAGCGGTACTGCCTGGACACCTGGGGCGTGTGGCCCCGGCCCGACTGGCTGCTGACCAGCTTCTGGGGGGGTG
Seq C2 exon
ATCTCAGAGCCGCCAGCAACATCATCTTCTCCAACGGGAACCTGGACCCCTGGGCAGGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.338
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(13.4=90.0)
A:
PF055777=Peptidase_S28=FE(12.1=100)
C2:
PF055777=Peptidase_S28=FE(16.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCCTGCAGGACCATTC
R:
AGAAGATGATGTTGCTGGCGG
Band lengths:
249-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development