RnoEX0029668 @ rn6
Exon Skipping
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2570002-2570542:-
Coord C1 exon
chr3:2570424-2570542
Coord A exon
chr3:2570176-2570332
Coord C2 exon
chr3:2570002-2570066
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCACTGTGGGGCACCTGCAGGCC
3' ss Score
5.48
5' ss Seq
GCGGTAAAG
5' ss Score
5.69
Exon sequences
Seq C1 exon
GGCTGGTCTACAACTCCTCTGGCATGGAACCCTGTTTTGACATCTACCAGATGTACCAAAGCTGTGCTGACCCCACTGGCTGTGGCACTGGCTCCAATGCCAGGGCCTGGGACTACCAG
Seq A exon
GCCTGTACGGAGATCAATCTGACCTTTGACAGCAACAACGTGACAGACATGTTCCCTGAAATCCCTTTCTCTGATGAACTCCGCCAGCAATACTGCCTGGATACATGGGGCGTGTGGCCTCGGCCAGACTGGCTGCAGACCAGCTTCTGGGGTGGCG
Seq C2 exon
ACCTTAAAGCAGCCAGCAACATCATTTTCTCCAACGGTGACCTAGACCCCTGGGCAGGGGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640-'13-27,'13-25,15-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(9.1=100)
A:
PF055777=Peptidase_S28=FE(12.1=100)
C2:
PF055777=Peptidase_S28=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTCTACAACTCCTCTGG
R:
CAGGGGTCTAGGTCACCGTT
Band lengths:
170-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]