GgaEX1021775 @ galGal4
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7745152-7748098:-
Coord C1 exon
chr17:7748034-7748098
Coord A exon
chr17:7747588-7747750
Coord C2 exon
chr17:7745152-7746177
Length
163 bp
Sequences
Splice sites
3' ss Seq
GCTCCCCCTTCTCCCTGCAGAAA
3' ss Score
12.71
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
ATCCCTCCAGTGAAGTGAAGGAAGAAATGAAAGACCTGAAGAACAGAGTGGAAGCACTGGAGCAG
Seq A exon
AAACTCCAGTTGGTGCTGGCTCCCTTCCACAACCTCATGCCATCTGCACCAGAGGACGTCGGCACAGACCCCATCAGCCGACTGTCCCACTCCCTCCAGCAACTGGACAGAATCGACTCCTTGAGTGAGCAGATCTCCTTCCTCGAGGAGCGGCTGGAGACTT
Seq C2 exon
GTTCCTGCAGGAATGAACTCTAGCTGAGCACCCAAAGAATCAGAACAGGCAGACTGCATCTGTAGCTTGTCTCTCTCTCCAGCCCCAGGCTGGGGCCAAAGACGCATCATCTCCAGGAAGGCACAAGGTAGAAAGAGAAGGCTGGTTTCCCTCATCAGCATCTCCAGTATTTTCTCTTCCAACTCACCTTACCAAAGGTCATGAAGTTACTTCCAAACTCGACTTTTAACCCTGAGCATCTCACCCCACTCCTGCTGGAGAGGAAGAAAATAAATGCCTTACCTCATGCCATTAGCAGTGCCTGTCTGGCTGTGCCAGAGACTGGCTCTACACGAGTTCATGTGGTGCTTGGTTTTGTTTGGTTTTTCCTGGCCCTGTAGGGCAGTAATTATAACGCTTTTTACACATGCCTGGAGGCATAGAGCCTGGTTTTATTGCTTTAATGCAAAACCTTTCCCTGTGACACTCCCATTATCAGCACAGAGCAGACAGGGACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420-'18-16,'18-14,21-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.255 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGAAGCACTGGAGCAG
R:
TGCTCAGGGTTAAAAGTCGAGT
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]