BtaEX0012530 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025410 | EGFL8
Description
Bos taurus EGF-like-domain, multiple 8 (EGFL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001099187]
Coordinates
chr23:27024477-27025464:-
Coord C1 exon
chr23:27025385-27025464
Coord A exon
chr23:27025149-27025302
Coord C2 exon
chr23:27024477-27024839
Length
154 bp
Sequences
Splice sites
3' ss Seq
AGGTATCTCTTCCTTTCTAGTGG
3' ss Score
7.58
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTCGTGAGGCTGGACTTGATAAGCGTGCCCTGAGGCGGGAGATTGGCGAGCTGCGAGGCCGCCTGGAGAGGCTGGAGCAG
Seq A exon
TGGGCCGGTCAGGCTGGGGCCTGGGTCCGAGCAGTGCTGCCCGTGCCCCCGGAAGAGCTGCAGCCCGAACAGGTGGCGGAGCTGTGGGGCCAGGGTGATAGGATCGAGTCTCTCAGTGACCAGGTGCTGCTGCTGGAGGAGAGACTGGGCACCT
Seq C2 exon
GCTCCTGTGAGGACAACAGCCTGGGCCCAGGCCTCAAAGGGCGAAGATAAGGAGCCTCTGCAGAGCCCCTGCCCTCTAATTTATACAGAAACTGGACTCACTAATCCTCTGGGATTGGCTGGCTAGGGAGCTGCAGATAAGGCTACTTGCTGCTGAGAAGCCATGGACAATGGAAACCATGCAAAGCTAAAGAATGGAGGAAGGCGGTTGCCACCCCTGAATCCTCGGGCTAGGGCCGATGCCTGGGTGAGAACTGCCTTCTTAACTCCTTAACAAAAACAGCCAGAACATGCTCAGATCTTGCTCAGTCTTTATTCTTGGTTTCTTGCTGTTATCCAGATAAGTAATAAAAATCAACCACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025410_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTTGATAAGCGTGCCC
R:
CATTGTCCATGGCTTCTCAGC
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development