RnoEX0031161 @ rn6
Exon Skipping
Gene
ENSRNOG00000000436 | Egfl8
Description
EGF-like-domain, multiple 8 [Source:RGD Symbol;Acc:1549706]
Coordinates
chr20:4378211-4378915:-
Coord C1 exon
chr20:4378836-4378915
Coord A exon
chr20:4378635-4378757
Coord C2 exon
chr20:4378211-4378429
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGTACCACTTTCCTTTGTAGTGG
3' ss Score
5.38
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
TTCGGGAAGCAGACAGCGAGGAGCATGCCCTGAGGCGGGAGGTTGCAGAGCTTCGTGGGCGTCTAGAGAGGCTGGAGCAG
Seq A exon
TGGGCCACACAGGCTGGGGCCTGGGTTCGAGCAGTGCTGCCGGTGGCCCCTGAAGACCTGCGGCCTGAACAGGTGGCTGAACTTTGGGGCCGGGGTGACAGGATCGAGTCCCTCAGTGACCAG
Seq C2 exon
GTTCCTGTGAGGACAACAGCCTGGGCCCAGGCCTCCATGGATGACAAGGAATGCCGGCAGCGGCTGGGGTCCCTAACTCACACAGAAACTATGCCTGCTAACGTGGGATCCCAAGATCTGGTACCAACCCCGAGGTGCTACAGCCACAGAGAACCCCACGTCTCTCTTTCTCTTTATTTCCAGTTGCTTGCTGTTATCCAGATAATAAAAACCAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000436-'9-16,'9-15,10-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.171 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTTGCAGAGCTTCGTGG
R:
TGGATAACAGCAAGCAACTGGA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]