DreEX6083118 @ danRer10
Exon Skipping
Gene
ENSDARG00000100657 | egfl7
Description
EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
Coordinates
chr21:7666975-7670679:-
Coord C1 exon
chr21:7670603-7670679
Coord A exon
chr21:7668870-7669044
Coord C2 exon
chr21:7666975-7667264
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTTTCTCTCTGCAGAAA
3' ss Score
13.74
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
GTGGAGGTTTGGGGTTGGTGGAGAACGTTACTGAAGAGGTTCAGATCCTAAAAAACCGAGTGGAGCTCCTGGAGCAG
Seq A exon
AAACTGGAGATGGTTCTAGCACCCTTCACCACTCTCCTACCTCTGGACGGAGCAGGGGACACCAACAGCTTCCTGTCTGAGCGAACCAATTTCCTGTCCCACTCTCTGCAGCAACTGGACCGCATCGAGTCGCTCAGCGAACAGGTCGGCTTTCTGGAGGAGAGAATCGGAGCCT
Seq C2 exon
GTGGCTGTCAGGAAAACTAGACGATCAACGTCATCACTGATCACAGGCTGACCCATCAAACATGTTCTCAAAAACACGAGGGAAATCATGTTGAAACTCTTTATATGGCACACGAGCCGGTGATTGATATTGTTCATGTCGTGTCATTTAACTGTTGTGTAAGTTTGAGTCAGGAGAAATGTAAATTTATGTATTTATAATTCCATGTTCTCGTCATGAGTTATGCTTTTTGGATAAGTTGCATTCCTTTTTTACGTCTCATTTTGTGTAATAAAACTGCTTAAATCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100657-'10-7,'10-6,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACCGAGTGGAGCTCCTG
R:
ACTCATGACGAGAACATGGAA
Band lengths:
248-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]