MmuEX0016422 @ mm9
Exon Skipping
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26447184-26448202:+
Coord C1 exon
chr2:26447184-26447248
Coord A exon
chr2:26447638-26447800
Coord C2 exon
chr2:26447938-26448202
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCAACCTTCCTTCCAAACAGAAA
3' ss Score
9.21
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GAGTGGACAGCATGGCGAGAGAGGAGGTGTACAGGCTGCAGGCTCGGGTTGATGTGCTAGAACAG
Seq A exon
AAACTGCAGTTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCACAGAGCATGGGCTACAAGATCCTGGCAGCCTGCTGGCCCATTCCTTCCAGCAGCTGGACCGAATTGATTCACTGAGTGAGCAGGTGTCCTTCTTGGAGGAACATCTGGGGTCCT
Seq C2 exon
GCTCCTGCAAAAAAGATCTGTGATAACCTCTCACCACCCAGGCTGGATAGAGCAGTCATCCCTAGATCCCTTGTAGCCAGAGTTCAGGCGCTGTCTGGTGGTGCCTATGAGCAGAAGGCCCTGCCTCATTGTCCCTCTTTCTTAGGAGGTTCCTAGGACTTGGGCATGGGGAGTGGGGTCTTGTGTGACTCTTCAGTGGGGCTCCCTGTCTAAGTGGTAAGGTGGGGATTGTCTCCATCTTTGTCATAATAAAGCTGAGACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.249 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCGAGAGAGGAGGTGTA
R:
AGAGTCACACAAGACCCCACT
Band lengths:
247-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: