RnoEX0031155 @ rn6
Exon Skipping
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4042733-4043936:+
Coord C1 exon
chr3:4042733-4042797
Coord A exon
chr3:4043367-4043529
Coord C2 exon
chr3:4043646-4043936
Length
163 bp
Sequences
Splice sites
3' ss Seq
GCAACCTTCCTTTCAAACAGAAA
3' ss Score
7.51
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GAGTGGACAGCGTGGTGAGAGAGGAGGTGTACAAGCTGCAGGCCCGGGTTGATGTATTAGAACAG
Seq A exon
AAACTGCAGCTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCCCGGAGCATGGGCTGCAAGATCCTGGCAGCCTGCTGGCCCACTCCTTCCAGCAGCTGGACCGGATTGACTCACTGAGCGAGCAGGTCTCCTTCCTGGAGGAACAGCTGGGGTCCT
Seq C2 exon
GCTCTTGCAAAAAAGACCTGTGATGGCTTCTCAGTGCCCATGTTGGATTGAGCTGTTACCCCTACGTCCCTTCTAGCCTGAGTTCAAGTGCTGTCCGGTGGTGCCTGTGAGCAGAAGGCCCTGCTTGTTTATCCCTCTCTCTTAGGAGGTTCCTAGGCCCTGGGCATGGGGAGGGGGGTCTTGTGTGGCTCTTAAGTGAGGCTTCCGGGAAAGGAATAAGATCTCCCTGCCTAAGAAGTGAGGTGGGGGCTGTCTCCACCTTTGTCATATTAAAGCTGGGACTTGAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388-'19-18,'19-17,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.127 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGGTGTACAAGCTGCA
R:
CGGAAGCCTCACTTAAGAGCC
Band lengths:
253-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]