MmuEX0016423 @ mm9
Exon Skipping
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34750294-34751036:-
Coord C1 exon
chr17:34750954-34751036
Coord A exon
chr17:34750722-34750875
Coord C2 exon
chr17:34750294-34750526
Length
154 bp
Sequences
Splice sites
3' ss Seq
AGTACTGCTTTTCTTTGTAGTGG
3' ss Score
5.72
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTCGGGAAGCAGACAGCGAAGAGGAGCGAGCCCTGAGGTGGGAGGTTGCAGAGCTTCGTGGGCGTCTGGAGAAGCTGGAGCAG
Seq A exon
TGGGCCACACAGGCTGGGGCCTGGGTTCGAGCAGTGCTGCCCATGCCCCCTGAAGAGCTGCGGCCTGAACAGGTGGCTGAGCTTTGGGGCCGGGGTGACAGAATTGAGTCCCTCAGCGACCAGGTGCTGCTACTGGAGGAAAGACTGGGTGCCT
Seq C2 exon
GTGCCTGTGAGGATAACAGCCTGGGCCCAAGCCTGCGTGGATGACGAGGAATGCCCGCAGCAGCTGGGGTCCCCAACTTACACAGAAGCTACACCTGCTAACCTGGGATCAGAAGATATGGATATCAACCACTGAAGTACAACAGGCCGCAGAGAACCCCACGTCTCTCTTTCTCTTTATTTTCAGTTGCTTGCTGTTATCCAGATAATAAAAACCAACCACACAAAACTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467-'11-14,'11-12,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.155 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGCGAAGAGGAGCGAG
R:
AGAGAGACGTGGGGTTCTCTG
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: