HsaEX7104386 @ hg38
Exon Skipping
Gene
ENSG00000241404 | EGFL8
Description
EGF like domain multiple 8 [Source:HGNC Symbol;Acc:HGNC:13944]
Coordinates
chr6:32167350-32168281:+
Coord C1 exon
chr6:32167350-32167429
Coord A exon
chr6:32167503-32167656
Coord C2 exon
chr6:32167910-32168281
Length
154 bp
Sequences
Splice sites
3' ss Seq
AGGCATCTCTTCCTTTCTAGTGG
3' ss Score
7.1
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTCGGGAGGCGGAAAAAGATGAGCGCGCTCTGAAGCAGGAGATTCACGAGCTGCGAGGGCGCCTGGAGCGGCTGGAGCAG
Seq A exon
TGGGCCGGTCAGGCTGGGGCCTGGGTCAGAGCGGTGCTGCCCGTGCCGCCTGAAGAGCTGCAGCCAGAACAGGTGGCTGAGCTGTGGGGCCGGGGTGACCGGATCGAATCTCTCAGCGACCAGGTGCTGCTGCTGGAGGAGAGGCTAGGTGCCT
Seq C2 exon
GCTCCTGTGAGGACAACAGCCTGGGCCTCGGCGTCAATCATCGATAAGAAGCCTCTACAGCACCCCTGCCCCCTAATTTATACAGAAACCGGACCCACTAATCCTCTGGGATTGGCCGACTGTGAGCTGCAGATAAGGCTATCAGCCACCAAAGAGCAATGAACAATGGAAACTTCAGAGAGCTGAAGAAAGGGGGAGGCCTGTGTTCTTGGCCTGCCCCTGAGTCTTCTGGCTGGGGGCAGGTTGCCTGGGCAAGAACTGCTTCTTCAATTCCTTAACAAATGCAACCACCAACACCCAGATCTCTCTCTCTCTTTATTTTCAGTTTTTTTGCTGTTATCCAGATAATTAATAAAAACCAACCACGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241404-'9-13,'9-10,11-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.090 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGGAGATTCACGAGCTG
R:
CCTCCCCCTTTCTTCAGCTCT
Band lengths:
247-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains