GgaEX1024555 @ galGal3
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11710730-11712313:-
Coord C1 exon
chr10:11712188-11712313
Coord A exon
chr10:11711199-11711363
Coord C2 exon
chr10:11710730-11710798
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTATATGCATTCCAAATAGATA
3' ss Score
6.16
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CAGATGTTAATGAATGTGCAGATCCCACAACCTGCATTAGTGGCACATGTGTCAATACTGCTGGTAGTTACACATGCGAGTGCCCTCCTGATTTTGAGCTGAATCCCACCCGCGTTGGCTGTGTTG
Seq A exon
ATACACGATCTGGCAACTGTTACCTGGACATTAAAACTCGGGGAGATAATGGTGGCACCTTTTGCAGCAATGAGATTGGAGTGGGTGTCTCTAAGGCTTCCTGTTGCTGCTCCCTGGGCAGAGCTTGGGGAGTTCCCTGTGAACAGTGCCCATCTGTGAACACAA
Seq C2 exon
CGGAGTATAAGATTCTTTGCCCTGGAGGAGAAGGATTCCGACCAAACCCTATTACAGTTATATTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'38-44,'38-43,39-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(85.4=95.3)
A:
PF0764510=EGF_CA=PD(12.5=10.7),PF0068312=TB=PU(85.7=64.3)
C2:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGTTAATGAATGTGCAGATCCC
R:
TAACTGTAATAGGGTTTGGTCGGA
Band lengths:
186-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]