MmuEX6104618 @ mm10
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125344025-125346452:-
Coord C1 exon
chr2:125346330-125346452
Coord A exon
chr2:125345855-125346019
Coord C2 exon
chr2:125344025-125344093
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTGTGTATGATAGATA
3' ss Score
8.24
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATGTTAATGAGTGTCTGGATCCCACCACCTGCATCAGTGGAAACTGTGTCAACACTCCCGGTAGTTACACATGCGATTGTCCTCCGGATTTTGAGCTGAATCCAACTCGTGTCGGCTGTGTCG
Seq A exon
ATACTCGCTCTGGAAACTGCTATCTGGATATCCGACCCCGGGGAGACAATGGAGATACAGCCTGCAGCAATGAAATTGGAGTTGGTGTCTCTAAGGCTTCCTGCTGTTGTTCACTGGGTAAAGCTTGGGGAACCCCATGTGAGCTGTGTCCTTCTGTGAACACAT
Seq C2 exon
CTGAGTATAAAATTCTTTGCCCTGGAGGAGAAGGTTTTCGTCCAAATCCCATCACCGTTATATTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'48-46,'48-45,49-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(85.4=97.6)
A:
PF0764510=EGF_CA=PD(12.5=10.7),PF0068312=TB=PU(85.7=64.3)
C2:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTGTCTGGATCCCACCA
R:
CTTCCAATATAACGGTGATGGGA
Band lengths:
186-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types