Special

GgaEX1024555 @ galGal4

Exon Skipping

Gene
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9694248-9705865:-
Coord C1 exon
chr10:9705743-9705865
Coord A exon
chr10:9704755-9704919
Coord C2 exon
chr10:9694248-9694373
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTATATGCATTCCAAATAGATA
3' ss Score
6.16
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATGTTAATGAATGTGCAGATCCCACAACCTGCATTAGTGGCACATGTGTCAATACTGCTGGTAGTTACACATGCGAGTGCCCTCCTGATTTTGAGCTGAATCCCACCCGCGTTGGCTGTGTTG
Seq A exon
ATACACGATCTGGCAACTGTTACCTGGACATTAAAACTCGGGGAGATAATGGTGGCACCTTTTGCAGCAATGAGATTGGAGTGGGTGTCTCTAAGGCTTCCTGTTGCTGCTCCCTGGGCAGAGCTTGGGGAGTTCCCTGTGAACAGTGCCCATCTGTGAACACAA
Seq C2 exon
ATCGGAATGAATGTCAAGAAATTCCCAATATCTGCAGCCATGGGCAGTGTATTGACACTGTCGGAAGTTTTTACTGTATTTGTCACAATGGATTCAAGACCAACGATGACAGAACAATGTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960_MULTIEX1-30/41=29-38
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0764510=EGF_CA=PU(85.4=97.6)
A:
PF0764510=EGF_CA=PD(12.5=10.7),PF0068312=TB=PU(85.7=64.3)
C2:
PF062476=Plasmod_Pvs28=PD(22.2=51.2),PF062476=Plasmod_Pvs28=FE(38.9=100),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAATGAATGTGCAGATCCCACA
R:
ACACATTGTTCTGTCATCGTTGGT
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]