GgaEX1024575 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:274957-300879:+
Coord C1 exon
chr28:274957-275052
Coord A exon
chr28:278911-279006
Coord C2 exon
chr28:300682-300879
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCATTTCTATTTCTAAACAGCTG
3' ss Score
9.05
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TCCAAACCTGCAATGTCAGATGCATGAATGGAGGAAGCTGCAATGAGGAATCTTGCCTCTGCCAGAAAGGTTACACTGGAACGTACTGTGGGCAGC
Seq A exon
CTGTCTGTGAAAATAGCTGTCAGAATGGAGGTCGCTGCATTGGACCAAACCGTTGTGCATGTGTATATGGATTTACCGGCCCCCAGTGTGAGAGAG
Seq C2 exon
ACTATCGTACTGGCCCCTGCTTTAGCCAAGTAAATAACCAGATGTGTCAGGGACAACTCAGCGGGATCGTCTGTACCAAGACCATGTGTTGTGCCACCATTGGACGGGCCTGGGGTCACCCGTGCGAGATGTGCCCTGCCCAGCCTCACCCTTGCCGACGAGGTTTCATTCCCAACATTCGTACTGGAGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068312=TB=WD(100=64.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAATGGAGGAAGCTGCA
R:
TGGCACAACACATGGTCTTGG
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]