Special

GgaEX1027974 @ galGal3

Exon Skipping

Gene
ENSGALG00000008905 | F1NEB3_CHICK
Description
NA
Coordinates
chr6:28905132-28907069:+
Coord C1 exon
chr6:28905132-28905266
Coord A exon
chr6:28906137-28906247
Coord C2 exon
chr6:28906953-28907069
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTCTCTGTCCCTACCGTAGAAG
3' ss Score
7.93
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ATGAGGCTGATGACTATGAGTACGAGTACTATGATGAATACGTGCAAGTGGAAGAGAAACTATCCCAAGAGATTCTGCTCTTGGGGGAACCTGACTGGGTCGACCCATCCCCTCTCTACAGAAGAATCCAGCAAG
Seq A exon
AAGATCTGTGCTCCTCCAACCCCTGCAAGAACAACGGCTGGTGTGAGATGAGAGGAAGCAATTTCACCTGCCTCTGCCCCAGGCCCTATACCGGGGACACCTGTGGGGAAG
Seq C2 exon
TGGAGGACACGTGTGTGGACCACAACTGTGTCAGAGGAGACTGCCTCGTTACATTAACCAAACCTTACTATCAGTGCAGCTGTAGCCATCCCTACAAGTTACCAGACTGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

In the CDS, with uncertain impact

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
PF0000822=EGF=WD(100=83.8)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGATGACTATGAGTACGAGT
R:
GCTGGCAGTCTGGTAACTTGT
Band lengths:
246-357
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]