HsaEX6090534 @ hg38
Exon Skipping
Gene
ENSG00000148702 | HABP2
Description
hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4798]
Coordinates
chr10:113574289-113577266:+
Coord C1 exon
chr10:113574289-113574405
Coord A exon
chr10:113575897-113576004
Coord C2 exon
chr10:113577150-113577266
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCTGTGTGTCTTAGATC
3' ss Score
10.39
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACTGGACCCCTGACCAGTATGATTACAGCTACGAGGATTATAATCAGGAAGAGAACACCAGTAGCACACTTACCCACGCTGAGAATCCTGACTGGTACTACACTGAGGACCAAGCTG
Seq A exon
ATCCATGCCAGCCCAACCCCTGTGAACACGGTGGGGACTGCCTCGTCCATGGGAGCACCTTCACATGCAGCTGCCTGGCTCCTTTCTCTGGGAATAAGTGTCAGAAAG
Seq C2 exon
TGCAAAATACGTGCAAGGACAACCCATGTGGCCGGGGCCAATGTCTCATTACCCAGAGTCCTCCCTACTACCGCTGTGTCTGTAAACACCCTTACACAGGTCCCAGCTGCTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148702-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=83.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCCCTGACCAGTATGA
R:
GAGCAGCTGGGACCTGTGTAA
Band lengths:
228-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains