MmuEX6033755 @ mm10
Exon Skipping
Gene
ENSMUSG00000025075 | Habp2
Description
hyaluronic acid binding protein 2 [Source:MGI Symbol;Acc:MGI:1196378]
Coordinates
chr19:56306773-56310137:+
Coord C1 exon
chr19:56306773-56306883
Coord A exon
chr19:56308837-56308944
Coord C2 exon
chr19:56310021-56310137
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCCTTGTGTCTTAGATC
3' ss Score
10.23
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATTGGACCCCCGATGACTATTACTACAGCTATGAGCAGTCCAGCCCAGACGAAGACCCCAGTGTCACGCAGACCACCCCTGAGAACCCCGACTGGTACTATGAAGACGATG
Seq A exon
ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG
Seq C2 exon
CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025075-'2-19,'2-8,5-19=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=83.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCCGATGACTATTACT
R:
GAGCAGTCTGGTCCCGTGTAA
Band lengths:
221-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types