RnoEX0040783 @ rn6
Exon Skipping
Gene
ENSRNOG00000016659 | Habp2
Description
hyaluronan binding protein 2 [Source:RGD Symbol;Acc:1302979]
Coordinates
chr1:277091025-277094445:+
Coord C1 exon
chr1:277091025-277091135
Coord A exon
chr1:277093122-277093229
Coord C2 exon
chr1:277094329-277094445
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCTTTGTGTCTTAGATC
3' ss Score
10.24
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
ATTGGACCCCCGATGACTATTACTACAGTTACGAGCAGTCCAGTCCAGACAAAGACGCCAGTGTCACGCAGACCTCCCCCGAGAACCCCGACTGGTACTATGAAGACGATG
Seq A exon
ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGAATACCTTCAGTTGCAGCTGCCCGGCCCCCTTCTCGGGGAGCCGGTGTCAGACGG
Seq C2 exon
TCCAAAACAAGTGCAAGGACAACCCATGTGTCCAGGGCGATTGCCTCATTACCCAGACGCCTCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016659-'2-4,'2-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=83.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCCGATGACTATTACT
R:
GAGCAGTCTGGTCCCGTGTAA
Band lengths:
221-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]