GgaEX1031290 @ galGal3
Exon Skipping
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4503191-4504263:-
Coord C1 exon
chr27:4504069-4504263
Coord A exon
chr27:4503733-4503932
Coord C2 exon
chr27:4503191-4503440
Length
200 bp
Sequences
Splice sites
3' ss Seq
CACTGCCCCCTGGTACCCAGCGC
3' ss Score
3.19
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCTGGCTGCACGAGCTGGGCAAGAGGCTGGAGGCTCCCTACATCAACAACTCAGTGGGGGGGCCCTCCATCCGCAGCGCCTACATCGCCTCCCTCTACTTCACCCTCAGCAGCCTGACCAGCGTGGGCTTCGGCAACGTCTGCGCCAACACTGATGCCGAGAAGATCTTCTCCATCTGCACCATGCTCATTGGGG
Seq A exon
CGCTGATGCACGCCGTTGTCTTTGGCAACGTCACGGCCATCATCCAGCGCATGTACTCGCGCCGCTCGCTCTATCACACCCGCATGAAGGACCTCAAGGACTTCATCCGCGTGCACCGCCTGCCCCAGCAGCTCAAGCAGAGGATGCTGGAGTACTTCCAGACCACCTGGTCGGTGAACAACGGCATAGATGCTAACGAG
Seq C2 exon
CTGCTGCGTGACTTCCCCGACGAGCTCCGTGCCGACGTGGCCATGCACCTGAACAAGGACATCCTGCAGCTGCCCATCTTTGAGACCGCCAGCCGAGGCTGCTTGCGCTCCCTCTCGCTGCACATCAAGACGTCGTTCTGTGCGCCGGGCGAGTACCTGCTGCGGCAGGGCGATGCGCTGCAGGCCAACTACTTTGTCTGCTCCGGCTCCCTCGAGGTGCTGAGGGACAGCGTGGTGTTGGCCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-'8-13,'8-11,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(31.0=100)
A:
PF0052026=Ion_trans=PD(4.8=14.9)
C2:
PF0002724=cNMP_binding=PU(45.5=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTACTTCACCCTCAGCA
R:
ACAAAGTAGTTGGCCTGCAGC
Band lengths:
302-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]