BtaEX6088758 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42927149-42930037:-
Coord C1 exon
chr19:42929843-42930037
Coord A exon
chr19:42929206-42929405
Coord C2 exon
chr19:42927149-42927398
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTGCCCGCTGCGCGCCACAGCGC
3' ss Score
4.87
5' ss Seq
GAGGTAGTG
5' ss Score
4.58
Exon sequences
Seq C1 exon
GCTGGTTGCACGAGCTGGGCAAGCGGCTGGAAGTGCCCTATGTCAACGGCTCAGCTGGCGGCCCGTCGCGGCGCAGCGCCTACATCGCCGCGCTCTACTTCACGCTGAGCAGCCTCACGAGCGTGGGCTTCGGCAACGTGTGCGCCAACACTGACGCCGAGAAGATCTTCTCCATCTGCACCATGCTCATAGGCG
Seq A exon
CGCTGATGCACGCCGTGGTATTTGGGAACGTGACGGCCATCATCCAGCGCATGTACTCGCGCCGCTCGCTCTACCACAGCCGCATGAAGGACCTCAAGGACTTCATCCGTGTGCACCGCCTACCACGGCCGCTCAAGCAGCGCATGCTCGAGTACTTCCAGACCACGTGGGCGGTCAACAGCGGCATTGACGCCAACGAG
Seq C2 exon
TTACTGCGTGACTTCCCAGACGAGCTGAGAGCTGATATTGCTATGCACCTGAATCGGGAGATCCTGCAGCTGCCGCTGTTTGGAGCAGCGAGCAGGGGCTGTCTGCGGGCCCTCTCCCTGCACATCAAGACCTCATTCTGCGCTCCTGGCGAATACCTGCTGCGCCGCGGGGATGCCCTGCAGGCGCACTACTACGTCTGCTCCGGCTCGCTGGAGGTGCTCCGTGACAACATGGTGCTGGCCATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195-'9-13,'9-10,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(31.0=100)
A:
PF0052026=Ion_trans=PD(4.8=14.9)
C2:
PF0002724=cNMP_binding=PU(42.6=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGCCCTATGTCAACGG
R:
TGAGGTCTTGATGTGCAGGGA
Band lengths:
302-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]