HsaEX6022741 @ hg38
Exon Skipping
Gene
ENSG00000089558 | KCNH4
Description
potassium voltage-gated channel subfamily H member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr17:42166297-42170301:-
Coord C1 exon
chr17:42170107-42170301
Coord A exon
chr17:42169477-42169676
Coord C2 exon
chr17:42166297-42166546
Length
200 bp
Sequences
Splice sites
3' ss Seq
GCCCGCTGCTGCTGCTGCAGCCC
3' ss Score
4.84
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
GCTGGTTGCATGAGTTGGGCAAGCGTCTGGAGGTGCCCTATGTCAATGGCTCGGTGGGCGGCCCATCACGGCGCAGCGCCTACATCGCGGCACTGTACTTCACTCTAAGCAGCCTCACCAGTGTGGGCTTTGGCAACGTGTGTGCCAACACCGACGCGGAGAAGATCTTCTCCATCTGCACGATGCTCATAGGCG
Seq A exon
CCCTGATGCACGCTGTGGTGTTCGGGAACGTGACAGCCATCATCCAGCGCATGTACTCGCGCCGCTCGCTCTACCACAGCCGCATGAAGGACCTCAAGGACTTCATCCGTGTGCACCGCCTGCCGCGGCCGCTCAAGCAGCGCATGCTCGAATACTTCCAGACCACGTGGGCCGTCAACAGCGGCATCGACGCCAACGAG
Seq C2 exon
TTACTGCGTGACTTCCCAGACGAGCTGAGAGCTGACATTGCTATGCACCTGAATCGGGAGATCCTGCAGCTGCCGTTGTTCGGGGCAGCGAGCAGGGGCTGCCTGCGGGCCCTATCGCTGCACATCAAGACCTCGTTCTGCGCTCCGGGCGAGTACCTGTTGCGCCGTGGGGATGCCCTGCAGGCACATTACTATGTCTGCTCCGGCTCGCTTGAGGTGCTCCGAGACAACATGGTGCTGGCCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089558-'10-11,'10-10,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(31.0=100)
A:
PF0052026=Ion_trans=PD(4.8=14.9)
C2:
PF0002724=cNMP_binding=PU(40.8=47.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCCTATGTCAATGGCTC
R:
AACGAGGTCTTGATGTGCAGC
Band lengths:
301-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains