DreEX0040886 @ danRer10
Exon Skipping
Gene
ENSDARG00000061990 | kcnh4b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4b [Source:ZFIN;Acc:ZDB-GENE-121214-54]
Coordinates
chr12:13399101-13422036:+
Coord C1 exon
chr12:13399101-13399295
Coord A exon
chr12:13401123-13401322
Coord C2 exon
chr12:13421787-13422036
Length
200 bp
Sequences
Splice sites
3' ss Seq
ACATTGTTTGTTTCATACAGCTC
3' ss Score
8.58
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCTGGCTGCATGAATTGGGCAAGCGTTTGGACAAGCCCTATATGAACAGTACATTTGGTGGTCCCTCAGTTCGCAGTGCCTACATTGCCTCTCTGTATTTTACCTTGAGCAGTCTGACCAGTGTGGGCTTTGGTAACGTTTGTGCCAACACTGATGCTGAAAAGATCTTCTCTGTTTGTACTATGCTTATTGGAG
Seq A exon
CTCTCATGCATGCTGTGGTGTTTGGAAATGTAACAGCTATTATCCAGCGCATGTACTCACGTCGCTCACTATATCATACACGCATGAAAGATCTAAAGGACTTCATTCGGGTTCACCGGCTGCCACAACAGCTGAAACAACGAATGCTGGAATATTTCCAAACCACCTGGTCTGTGAATAATGGCATCGATGTCAATGAG
Seq C2 exon
CTCTTGCATGATTTTCCTGATGAGTTGAGGGCAGATATAGCCATGCACTTAAACAAAGACATCCTGCAACTGCCTGTGTTTGAAGCTGCCAGTCGGGGTTGCCTGCGCTCACTTTCCCTCCACATCAAAACTTCTTTCTGCACCCCGGGAGAATATCTCATCCGACAAGGCGATGCATTGCAGGCCAACTATTTTGTCTGTTCTGGGTCACTGGAGGTTCTAAAGGACAACATGGTTTTGGCTATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061990-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(31.0=100)
A:
PF0052026=Ion_trans=PD(4.8=14.9)
C2:
PF0002724=cNMP_binding=PU(45.5=47.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGGGCTTTGGTAACGT
R:
AACCTCCAGTGACCCAGAACA
Band lengths:
296-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]