RnoEX0046034 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88654813-88657467:-
Coord C1 exon
chr10:88657273-88657467
Coord A exon
chr10:88656665-88656864
Coord C2 exon
chr10:88654813-88655062
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTGCCACCTCTGTAGCGC
3' ss Score
4.4
5' ss Seq
GAGGTAGTG
5' ss Score
4.58
Exon sequences
Seq C1 exon
GTTGGTTGCATGAGCTGGGTAAGCGGCTGGAGGAGCCTTATGTCAATGGCTCGGCCGGTGGACCATCTCGGCGCAGTGCCTACATCGCCGCGCTGTACTTCACGCTGAGCAGCCTCACCAGTGTAGGCTTCGGCAACGTTTGTGCCAACACTGACGCTGAGAAGATCTTCTCCATCTGCACGATGCTCATAGGCG
Seq A exon
CGCTGATGCACGCGGTGGTGTTTGGGAATGTCACAGCCATCATCCAGCGCATGTACTCCCGACGCTCGCTCTACCACAGCCGCATGAAGGATCTCAAGGACTTCATCCGAGTGCATCGTCTGCCCCGCCCACTCAAGCAGCGCATGCTCGAGTACTTCCAGACTACATGGGCCGTCAACAGCGGCATCGATGCCAACGAG
Seq C2 exon
TTACTGCGTGACTTCCCGGATGAGCTGCGAGCTGACATCGCCATGCACCTGAATCGGGAGATCCTGCAGCTGCCTTTGTTTGGAGCAGCAAGCAGGGGCTGCCTTCGTGCCCTCTCCCTGCACATCAAGACCTCATTTTGTGCTCCTGGGGAGTTCCTGCTACGCCGTGGGGATGCCCTGCAGGCACACTACTATGTCTGCTCTGGCTCTCTTGAGGTGCTCCGAGACAACACGGTGCTGGCCATCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'11-12,'11-10,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(31.0=100)
A:
PF0052026=Ion_trans=PD(4.8=14.9)
C2:
PF0002724=cNMP_binding=PU(41.7=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTATGTCAATGGCTCGG
R:
TGAGGTCTTGATGTGCAGGGA
Band lengths:
297-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]