DreEX6015827 @ danRer10
Exon Skipping
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17434213-17438767:+
Coord C1 exon
chr3:17434213-17434407
Coord A exon
chr3:17435173-17435372
Coord C2 exon
chr3:17438518-17438767
Length
200 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCTTCTCTCACAGCTC
3' ss Score
10.81
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCTGGCTGCAGGAGCTGGGCAAGCGTCTGGAGACTCCATACACGAATGGTACAGTTGGCGGGCCGTCTCTGCGCAGCGCCTACATCGCTTCGCTCTACTTCACATTGAGCAGTCTGACTAGCGTCGGCTTCGGAAACGTCTGTGCCAACACAGATGCCGAGAAGATCTTCTCCATCTGCACCATGCTCATCGGGG
Seq A exon
CTCTGATGCATGCGGTGGTGTTTGGAAACGTGACCGCCATCATCCAGCGCATGTACTCTCGCCGTTCTCTCTACCACACGCGCATGAAGGACCTGAAGGACTTTATCCGTGTGCATCGCCTGCCGCAGCAGCTCAAGCAGCGCATGCTGGAGTACTTCCAAACCACTTGGTCTGTCAACAATGGCATCAACGCCAACGAG
Seq C2 exon
CTTTTGCATGACTTCCCGGACGAGCTGCGGGCAGACATCGCCATGCACCTGAATAAAGACATTCTGCAGCTGCCACTCTTCTCCTCTGCCAGTAGAGGGTGTCTGCGTTCACTCTCTCTGCACATTAAAACCTCCTTCTGCGCTCCTGGAGAATACCTCATACGGCACGGGGACGCTCTGCATGCCCAACACTTTGTCTGCTCGGGGTCATTGGAGGTTCTGAAGGACGGCATGGTGCTGGCCATACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(31.1=100),PF068148=Lung_7-TM_R=PD(4.0=6.1)
A:
PF0052026=Ion_trans=PD(4.8=14.9)
C2:
PF0002724=cNMP_binding=PU(45.5=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAGTCTGACTAGCGTCG
R:
CAATGACCCCGAGCAGACAAA
Band lengths:
303-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]