GgaEX1032916 @ galGal4
Exon Skipping
Gene
ENSGALG00000004620 | LAMC1
Description
laminin, gamma 1 (formerly LAMB2) [Source:HGNC Symbol;Acc:HGNC:6492]
Coordinates
chr8:7479970-7482812:+
Coord C1 exon
chr8:7479970-7480100
Coord A exon
chr8:7481071-7481237
Coord C2 exon
chr8:7482624-7482812
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTCTTGTTAACCAGATG
3' ss Score
7.76
5' ss Seq
TGCGTACGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
GAATGGGTGACGGCCACCGATATTAGGGTGAGCCTCAACCGCCTCAACACCTTCGGAGATGAAGTTTTCAATGACCCCAAAGTCCTCAAGTCGTATTACTACGCGATTTCTGATTTTGCCGTGGGTGGAAG
Seq A exon
ATGCAAATGCAATGGCCATGCGAGCGAGTGCATAAGGAACGAGCTTGGGAAGCTGGTCTGCAACTGCAAGCACAACACCTTTGGGGATGACTGTGAGAAGTGCCTTCCCTTCTTCAATGACCGGCCGTGGAGGAGAGCAACAGCAGAAAGTGCCAACGAGTGCTTGC
Seq C2 exon
CTTGTGACTGCAATGGGAGGTCACAGGAGTGCTACTTCGACCCCGAGCTGTACCGCTCCACCGGCCACGGCGGGCACTGCATGGGCTGCCGGGACAACACCGACGGCGCCCACTGCGAGAGGTGCAGGGACAGCTTCTACCGCCTCGGGAGCGAGGAGGGCTGCCTGCCCTGCAGCTGCAACCCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004620-'17-11,'17-9,18-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(25.9=95.5)
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=WD(100=84.4),PF0005319=Laminin_EGF=PU(13.3=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGATATTAGGGTGAGCCTCA
R:
TAGAAGCTGTCCCTGCACCTC
Band lengths:
255-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]