MmuEX6028270 @ mm10
Exon Skipping
Gene
ENSMUSG00000026478 | Lamc1
Description
laminin, gamma 1 [Source:MGI Symbol;Acc:MGI:99914]
Coordinates
chr1:153251952-153258206:-
Coord C1 exon
chr1:153258076-153258206
Coord A exon
chr1:153255189-153255355
Coord C2 exon
chr1:153251952-153252140
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTCTTTTCTCTCCAGGTG
3' ss Score
14.13
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
GAATGGGTAACTGCCACTGACATCAGAGTGACGCTCAATCGCCTGAACACCTTTGGAGATGAAGTGTTTAACGACCCCAAAGTTCTCAAGTCTTACTATTACGCAATCTCAGACTTTGCTGTGGGCGGCAG
Seq A exon
GTGTAAATGTAACGGACATGCCAGCGAGTGTGTAAAGAACGAGTTTGACAAACTCATGTGCAACTGCAAACATAACACATACGGAGTTGACTGTGAAAAGTGCCTGCCTTTCTTCAATGACCGGCCGTGGAGGAGGGCGACTGCTGAGAGCGCCAGCGAGTGCCTTC
Seq C2 exon
CTTGTGACTGCAATGGCCGATCCCAAGAGTGCTACTTTGATCCTGAACTATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATGGTGCCAAGTGCGAGAGGTGCCGGGAGAATTTCTTCCGCCTGGGGAACACTGAAGCCTGCTCTCCGTGCCACTGCAGCCCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026478-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(17.9=95.5)
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=WD(100=84.4),PF0005319=Laminin_EGF=PU(13.3=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGACATCAGAGTGACGC
R:
AGAAATTCTCCCGGCACCTCT
Band lengths:
256-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types