RnoEX6044741 @ rn6
Exon Skipping
Gene
ENSRNOG00000002680 | Lamc1
Description
laminin subunit gamma 1 [Source:RGD Symbol;Acc:621052]
Coordinates
chr13:70692416-70699001:-
Coord C1 exon
chr13:70698871-70699001
Coord A exon
chr13:70695913-70696079
Coord C2 exon
chr13:70692416-70692604
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTCTTCTCTCCAGGTG
3' ss Score
13.56
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
GAATGGGTGACAGCCACTGACATCAGAGTCACACTCAATCGCCTGAACACCTTTGGAGATGAAGTATTCAATGACCCCAAAGTCCTCAAGTCTTACTATTATGCAATCTCGGACTTTGCTGTGGGTGGCAG
Seq A exon
GTGTAAATGTAATGGACATGCCAGTGAGTGTGTAAAGAACGAGTTTGGGAAGCTCGTGTGCAACTGCAAGCATAACACATACGGAGTTGACTGTGAAAAGTGCCTGCCTTTCTTCAACGATCGGCCGTGGAGGAGAGCAACTGCCGAGAGTGCCAACCAGTGCCTGC
Seq C2 exon
CTTGCGACTGCAATGGCCGATCCCAAGAATGCTACTTTGACCCTGAGCTATACCGTTCCACTGGGCACGGTGGCCACTGTACCAACTGCCGGGATAACACAGACGGTGCCAAGTGCGAGAGGTGCCGGGAGAACTTCTTCCGCCTGGGGAACACTGAAGCCTGCTCTCCGTGCCACTGCAGCCCCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002680-'8-6,'8-4,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(17.9=95.5)
A:
PF0005319=Laminin_EGF=WD(100=94.7)
C2:
PF0005319=Laminin_EGF=WD(100=84.4),PF0005319=Laminin_EGF=PU(13.3=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGAACACCTTTGGAGAT
R:
GAGCAGGCTTCAGTGTTCCC
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]