GgaEX1034359 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30522827-30568825:-
Coord C1 exon
chr3:30568754-30568825
Coord A exon
chr3:30549204-30549226
Coord C2 exon
chr3:30522827-30522952
Length
23 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTCTGGTTTTAGTGG
3' ss Score
9.04
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTTACCATGGATACAGTCCTATGACAGAATGCCCACAAGGCTACAAGAGGATCAATGCTACGTTTTGTCAAG
Seq A exon
TGGCAACTGCAGCCCCTGATCAG
Seq C2 exon
ATATCAATGAATGTGAGAGATCTGACCTCTGTTCACCTCATGGAGAGTGTCTAAACACAGATGGTTCCTACCAGTGCATATGTGAGCAGGGCTTTTCTGTGTCTGCAGACGGCCGAACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448_MULTIEX3-4/15=C1-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(15.9=28.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NO
C2:
PF062476=Plasmod_Pvs28=PD(24.7=90.7),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTATGACAGAATGCCCAC
R:
TCCATGAGGTGAACAGAGGTCA
Band lengths:
103-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]