MmuEX6079396 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75276396-75282427:+
Coord C1 exon
chr17:75276396-75276623
Coord A exon
chr17:75278952-75278974
Coord C2 exon
chr17:75282328-75282427
Length
23 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTCTGGTTTTAGTGG
3' ss Score
8.79
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCGTTCATAGACGCAGGCCAATCCATCAGCATATAGGTAAAGAAGCTGTATATGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGTGGGAACACGGGCCGAGAGGGGCGGAGCCCGAAG
Seq A exon
TGGTAACAGCACCTCCTGAGAAG
Seq C2 exon
GAAATACCTTCACTGGATCAAGAGAAAACCAGACTTGAACCTGGGCAACCCCAGCTCTCCCCAGGGGTTTCAACTATTCATCTGCACCCACAGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'30-30,'30-29,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=1.000 C2=0.760
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=17.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAGGCCCTGACCTC
R:
GCCCAGGTTCAAGTCTGGTTT
Band lengths:
103-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types