RnoEX0051343 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21315042-21321049:-
Coord C1 exon
chr6:21320822-21321049
Coord A exon
chr6:21318563-21318585
Coord C2 exon
chr6:21315042-21315141
Length
23 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTCTGGTTTTAGTGG
3' ss Score
8.96
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCATTCATAGACGCAGGCCAATCCATCAGCATATAGGTAAAGAAGCTGTATTTGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGCGGGAACATGGGCCGGGAGTGGCAGAGCCTGAAG
Seq A exon
TGGTAACAGCACCTCCTGAGAAG
Seq C2 exon
GAAATACCCTCACTGGATCAAGAGAAAACAAGACTTGAACCTGGGCAACCCCAGCTCTCCCCAGGGGTTTCAACTATTCATCTGCACCCACAGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'23-22,'23-20,24-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=0.688 C2=0.824
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=6.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAGGCCCTGACCTC
R:
GGTTGCCCAGGTTCAAGTCTT
Band lengths:
107-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]