GgaEX1035311 @ galGal3
Exon Skipping
Gene
ENSGALG00000016890 | A3F958_CHICK
Description
NA
Coordinates
chr1:149566861-149572597:-
Coord C1 exon
chr1:149572397-149572597
Coord A exon
chr1:149571066-149571329
Coord C2 exon
chr1:149566861-149566914
Length
264 bp
Sequences
Splice sites
3' ss Seq
CAGTGTTGTTTTGCACGTAGGTG
3' ss Score
6.42
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCCACATTTCCAGTGGGTCCCACAATAGGAACGAACACGGCTATTAGCTTTGCTCCGTACCTAACGCCAGTAACACCAGGAGTTGGCTTAGTCCCGACTGAGATCCTGCCCACGCCACCCGTCATTGTTCCTGGAAGCCCACCGGTTTCAGTCCCTGGTTCTACTGCTACTCAGAAACTCCTCAGGACTGATAAACTGGAG
Seq A exon
GTGTGCAGGGAGTTCCAGAGGGGAAACTGTGCGCGTGGAGAGACTGATTGCCGCTTTGCACATCCGGCAGACAGCACAATGATTGACACAAACGACAACACCGTAACCGTGTGTATGGATTACATAAAAGGTCGTTGCATGAGGGAGAAATGCAAGTATTTTCACCCTCCTGCACATTTGCAGGCCAAAATCAAAGCGGCGCAACATCAAGCTAACCAGGCTGCAGTGGCAGCCCAGGCAGCTGCGGCAGCTGCGACTGTGATG
Seq C2 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCAACTGTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890-'3-5,'3-4,4-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.836 A=0.330 C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
PF0064219=zf-CCCH=PD(81.5=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATTTCCAGTGGGTCCCA
R:
GGTCTACAGTTGCTTCGAGAGG
Band lengths:
252-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]