RnoEX0053021 @ rn6
Exon Skipping
Gene
ENSRNOG00000010737 | Mbnl2
Description
muscleblind-like splicing regulator 2 [Source:RGD Symbol;Acc:1591755]
Coordinates
chr15:105753396-105764288:+
Coord C1 exon
chr15:105753396-105753596
Coord A exon
chr15:105756785-105757049
Coord C2 exon
chr15:105764135-105764288
Length
265 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTCCTGTTGTCTCAGGTA
3' ss Score
8.38
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCCATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTGGGGTTAGTCCCAACAGAGGTTCTACCCACCACACCTGTCATTGTTCCGGGAAGTCCGCCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACCGATAAACTGGAG
Seq A exon
GTATGCAGGGAGTTCCAGCGAGGAAACTGTGCCCGGGGAGAGACAGACTGCCGCTTTGCACACCCGGCAGACAGCACCATGATCGACACAAACGACAACACCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGGAGAAATGCAAATATTTTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAGGCCGCGGTGGCCGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATG
Seq C2 exon
GCCTTCCCTCCCGGTGCTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGAGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTTTGACCAGTGCGCAGTTGCAGCAACACACGGCGTTCATTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010737_MULTIEX1-4/5=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
PF0064219=zf-CCCH=PD(81.5=45.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGGGACAAATGCGGCCAT
R:
CTGGTCAAAGCCTGCTGGTAG
Band lengths:
294-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]