GgaEX1035311 @ galGal4
Exon Skipping
Gene
ENSGALG00000016890 | MBNL2
Description
muscleblind-like 2 isoform 5 [Source:RefSeq peptide;Acc:NP_001156846]
Coordinates
chr1:144597391-144607737:-
Coord C1 exon
chr1:144607573-144607737
Coord A exon
chr1:144602556-144602663
Coord C2 exon
chr1:144597391-144597544
Length
108 bp
Sequences
Splice sites
3' ss Seq
CAGTGTTGTTTTGCACGTAGGTG
3' ss Score
6.42
5' ss Seq
ACCGTGTGT
5' ss Score
3.07
Exon sequences
Seq C1 exon
GGTCGTTGTACAAGGGAGAACTGCAAGTACCTTCACCCACCAACGCATTTAAAAACTCAACTGGAAATCAATGGCAGGAACAACTTAATCCAACAAAAAACTGCAGCAGCTATGCTTGCACAGCAAATGCAGTTCATGTTTCCAGGAACCCCACTACAGCCAGTG
Seq A exon
GTGTGCAGGGAGTTCCAGAGGGGAAACTGTGCGCGTGGAGAGACTGATTGCCGCTTTGCACATCCGGCAGACAGCACAATGATTGACACAAACGACAACACCGTAACC
Seq C2 exon
GCCTTTCCTCCCGGTGTTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAATGGTGCCAGTGCCGTTTTCAATCCCAGTGTCTTGCACTATCAACAGGCTCTTGCCAATGCTCAGTTGCAGCAACATGCAGCGTTCATCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890_MULTIEX2-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0273412=Dak2=FE(39.3=100),PF0064219=zf-CCCH=PD(81.5=61.1)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGTACAAGGGAGAACTGCA
R:
GATTGAAAACGGCACTGGCAC
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]