DreEX0045308 @ danRer10
Exon Skipping
Gene
ENSDARG00000018460 | mbnl2
Description
muscleblind-like splicing regulator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9582]
Coordinates
chr1:2038342-2053822:+
Coord C1 exon
chr1:2038342-2038542
Coord A exon
chr1:2042908-2043162
Coord C2 exon
chr1:2053666-2053822
Length
255 bp
Sequences
Splice sites
3' ss Seq
TTTGCGTCCGCGAACGGCAGGTG
3' ss Score
5.36
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CCTACATTTCCTGTGAGTCAAGGTCTGGGCTCGAACCCAGGTCTGAGTTACGCGCCGTATCTGACTCCCATGAGCCACGGCATGGGTCTGGTCCCCACAGAGATGCTCCCCAGCACCCCAGTCATCGTCCCGGGCAGTCCTCCAGTCAGCGTGCCCAGCTCGTCCTCCACGCAGAAACTACTGCGCACAGACAAGCTGGAG
Seq A exon
GTGTGCCGTGAGTTTCAGCGGGGTAACTGCGCGCGCGGCGAGACCGACTGCCGCTTCGCCCATCCTAGCGACAGCCCGATGATCGACACGAGCGACAACACGGTCACGGTGTGCATGGACTACATCAAGAGCCGCTGCTCACGCGAGAAGTGCAAGTATTTCCACCCTCCAGCGCACCTGCAGGCCAAGATCAAAGCAGCGCAGCATCAGGCCAACCAGACCGCCGTCGCAGCGCAGGCCGCCGCTGCAGCCATG
Seq C2 exon
GCGTTTCCGCATGGAGTCCTGCAGCCCCTACCAAAGAGACCAGCACTAGAAAAGAGTAACGGGGCCAGCACGCTCTTCAACCCCAGTGTCTTGCACTACCAACAGGCTTTGGCCAGCGCACAGCTTCAGCAGCCCACCGCTGCGTTCTTTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018460_MULTIEX1-4/5=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.657 A=0.210 C2=0.759
Domain overlap (PFAM):
C1:
PF149201=MTBP_C=PU(29.8=67.2),PF0064219=zf-CCCH=PU(11.1=4.5)
A:
PF149201=MTBP_C=FE(55.6=100),PF0064219=zf-CCCH=PD(81.5=25.9)
C2:
PF149201=MTBP_C=PD(0.7=1.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGAGTCAAGGTCTGGG
R:
CCAAAGCCTGTTGGTAGTGCA
Band lengths:
305-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]