DmeEX0008590 @ dm6
Exon Skipping
Gene
FBgn0265487 | mbl
Description
The gene muscleblind is referred to in FlyBase by the symbol Dmelmbl (CG33197, FBgn0265487). It is a protein_coding_gene from Dmel. It has 19 annotated transcripts and 19 polypeptides (18 unique). Gene sequence location is 2R:17216549..17379376. Its molecular function is described by: RNA binding; metal ion binding; nucleic acid binding. It is involved in the biological process described with 9 unique terms, many of which group under: regulation of nucleobase-containing compound metabolic process; reproductive process; programmed cell death; apoptotic process; organic cyclic compound metabolic process. 93 alleles are reported. The phenotypes of these alleles manifest in: fascicle; larva; rhabdomere; visceral muscle; cytoskeleton. The phenotypic classes of alleles include: increased mortality during development; some die during embryonic stage; phenotype; courtship behavior defective.
Coordinates
chr2R:17352129-17359557:+
Coord C1 exon
chr2R:17352129-17352305
Coord A exon
chr2R:17354179-17354412
Coord C2 exon
chr2R:17359306-17359557
Length
234 bp
Sequences
Splice sites
3' ss Seq
GAATCCGATCGCAAATCCAGGTG
3' ss Score
2.82
5' ss Seq
GCGGTATGG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GCAACAAACCCCTATCTGACCGGCATTCCGGCCAACTCGTACAGTCCGTACTACACAACGGGACACCTGGTGCCCGCCTTGCTGGGTCCGGATCCCGTGACCTCCCAACTGGGACCCGTGGTGCCCCAAACAGTGCAGGTGGCACAGCAGAAAATACCACGTTCCGACAGATTAGAG
Seq A exon
GTGTGCCGCGAATTCCTGCGCGGCGCCTGCAAACGGGCGGAATCCGAGTGCCGGTTCGCCCATCCGCAGGAGAGCGTCGCCAGGCACGACGACGGCTCGATAACGGTTTGCATGGACGCCGTGAAGGGCAGGTGCGCACGCGACCCCTGCCGCTACTTCCATCCCCCCCTGCACCTACAGGCACAATTAAAAGCGGCCCAAACACGCGCCACCGCTGTCGCTGCTGCAGCTGCG
Seq C2 exon
ACCTCACCTCTTGCGGCACACCATCACCAGCAACAACAACAATTGCAACACCAGCTGAACAACATCAACAACAACAACAACCACAGCACCGCTGGCGCAGCAGCCACCTCGACAACAGCAACAACAACCACAAACAACGCCGCTGCCGCCGCCGCCGCTGCTGCCGCCGCCGCTGCCGCCGCTGTCATGGGCCATCACACACTGGAAGTGGGCAAGAAGCGGGCGGCGGACACGACCGACATGTTTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0265487_MULTIEX2-1/6=C1-2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.435 A=0.109 C2=0.608
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=5.1)
A:
PF0064219=zf-CCCH=PD(81.5=28.2)
C2:
PF098064=CDK2AP=PD(71.0=59.7)
Main Inclusion Isoform:
FBpp0297556
Main Skipping Isoform:
FBpp0297561
Other Inclusion Isoforms:
FBpp0307871, FBpp0307872, FBpp0307873
Other Skipping Isoforms:
FBpp0086144, FBpp0302029
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCTATCTGACCGGCATT
R:
TGTTGTTGCTGTTGTCGAGGT
Band lengths:
297-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)