GgaEX1035314 @ galGal3
Exon Skipping
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3501843-3511524:-
Coord C1 exon
chr4:3511324-3511524
Coord A exon
chr4:3509667-3509903
Coord C2 exon
chr4:3501843-3501993
Length
237 bp
Sequences
Splice sites
3' ss Seq
CGATGTGACTTTCTTTTAAGGTT
3' ss Score
9.25
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ACGACATTTCCTGTGACTCCATCGCTTGCAACAAGCCCCACAATGGCTTTTAGTCCCTACCTGAGTCACGTTTCTCCTGGGATGGGCTTGGTTCCTGCAGAGCTTTTACCAAATACTCCTGTCCTGGTTTCTGGAAATCCAACTGTTACGGTACCAGGAAGCTCTGCTGGGCAGAAACTGATGCGTACGGATAAACTGGAG
Seq A exon
GTTTGTCGAGAGTTTCAGCGTGGAAATTGCACACGTGGTGAGAACGACTGCCGCTATGCTCACCCGATAGATATTGCGATGATAGACACCAATGAAAATACTGTTACAGTTTGCATGGATTACATCAAAGGTCGATGCTCTAGGGAGAAATGCAAGTACTTTCATCCCCCTGCACACCTGCAAGCCAAAATCAAGGCAGCTCAACATCAGGTGAACCAGACAGCTGCAGCTGCAATG
Seq C2 exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066-'8-8,'8-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.888 A=0.278 C2=0.657
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
PF0064219=zf-CCCH=PD(81.5=27.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACTCCATCGCTTGCAA
R:
TGGTAGTGGAAAACGCTTGGG
Band lengths:
292-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]