DreEX6029072 @ danRer10
Exon Skipping
Gene
ENSDARG00000052978 | mbnl1
Description
muscleblind-like splicing regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060929-704]
Coordinates
chr2:47950836-47958586:+
Coord C1 exon
chr2:47950836-47951087
Coord A exon
chr2:47954263-47954502
Coord C2 exon
chr2:47958533-47958586
Length
240 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCTGCATATCCTCAGGTG
3' ss Score
9.64
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CCTATGTTTTCGGTCTCGCCAAGCCTTGCAAGCAACGCCAGTGCAGCTGCGGCAGCGGCGGCTGCGGCTGCGTTTAATCCGTACCTGGGTCCGGTGTCTCCTGGCCTGATGTCCGCAGAGATCCTGCCCAGTGCACCGGTGCTGATGGCGGGCAGCCCTGGGGTGGCGTCTGTGCCGTCCGCTGCCAACGCCGCTGCTGCTGCCGCTTCAGCCGCCGCCGCACAGAAACTGCTCAGAACAGACCGACTGGAG
Seq A exon
GTGTGTCGTGAATACCAGCGTGGCAACTGCTCTCGTGGGGAGACGGACTGCAGGTTTGCCCACCCTGCCGACAGCACAATGATCGACCCCAGCGACAACACAGTGACGGTGTGTATGGATTACATAAAGGGCCGCTGCTCCAGAGACAAGTGCAAATACTTCCACCCTCCTGCTCACCTGCAGGCCAAAATAAAAGCCACCCAACACCAGGTCAATCAGGCCTCGGCCGCCGCTGCCATG
Seq C2 exon
ACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAAGCCACCTTTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052978-'9-7,'9-5,10-7=AN
Average complexity
A_C2
Mappability confidence:
78%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.807 A=0.166 C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=3.6)
A:
PF0064219=zf-CCCH=PD(81.5=27.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGTTTTCGGTCTCGCCA
R:
CAGGTCAAAGGTGGCTTCGAG
Band lengths:
306-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]