BtaEX6002860 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116252993-116265809:-
Coord C1 exon
chr1:116265609-116265809
Coord A exon
chr1:116255135-116255392
Coord C2 exon
chr1:116252993-116253013
Length
258 bp
Sequences
Splice sites
3' ss Seq
TGCACTTTATGACCCCATAGGTA
3' ss Score
8.23
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CCAATGTTTTCAGTTGCACCAAGCTTAGCTACCAATGCATCAGCAGCCTTTAATCCCTACCTGGGACCTGTTTCCCCAAGCCTGGTTCCAGCAGAGATCTTACCGACTGCACCAATGTTGGTTACAGGGAACCCTGGGGTCCCTGTACCTGCAGCTGCTGCAGCTGCTGCACAGAAATTAATGCGGACAGACAGACTTGAG
Seq A exon
GTATGTCGAGAGTACCAGCGAGGCAATTGCAACAGAGGAGAAAATGATTGTCGGTTTGCCCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCACCGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTCCATCCTCCCGCACATCTGCAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCCGCAGCACAGGCTGCAGCCACTGCAGCTGCCATG
Seq C2 exon
GAAATTCCTCAAGCTGTACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564-'19-17,'19-14,20-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.791 A=0.184 C2=0.886
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
PF0064219=zf-CCCH=PD(81.5=25.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]