RnoEX0053013 @ rn6
Exon Skipping
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150727382-150864896:+
Coord C1 exon
chr2:150727382-150728862
Coord A exon
chr2:150855966-150856223
Coord C2 exon
chr2:150864802-150864896
Length
258 bp
Sequences
Splice sites
3' ss Seq
TGCGTTTAATGACCCCATAGGTG
3' ss Score
7.96
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGAGAAAGATACCCACCAACACCCGTGCAGCTTCTTTCCCGCCCTTCGCCTTCCAGGTTCCAGGCGGTGCGGTTCTTCTGCCGCTGCAGGCCGGGCCGCTGACTCTAACCTTCCGTCTAACCTTGCGGGCCTCGCAGACTGGGCGCGGAGCCCCAGGAGCTGGAGCAGCGGTGAGCGGCGCGGGCCCGGGCGAGCGGGCGAGCGGGCGGGCGGGGGCCGGGGCTGCGCGTGGGAGCTCGGCGCGTCCGCGCGCCTTCCTGGCGGGGCTGGCGCGGGGGAGGGGCCGCGCAGCGGCGGAAACCGGCGCGCGGCGATAAGAGGATGCACGGCGACATACCCCAGTCTCTCACCGCAGCCCGGAGGAGTCGGGGCGCTAGCCATGCTCCGGTGACCCGGACCCGGCCAGTTTCCTTTCCCGTGGCGGGCATCCCGGAGTAGCGATCCCACAATGCCCCGGGCAGTCGGGGCCCCGGCGGGCAGCCTGCACGGCCACGTGAGAG
Seq A exon
GTGTGCCGAGAGTACCAGCGTGGCAATTGCAACCGAGGAGAAAATGACTGTCGATTTGCTCATCCTGCTGACAGCACAATGATTGATACCAATGACAACACAGTCACTGTCTGCATGGATTACATCAAGGGGAGATGCTCTCGGGAAAAGTGCAAATACTTCCATCCCCCCGCACACCTGCAAGCCAAGATCAAGGCTGCTCAATACCAGGTCAACCAGGCTGCAGCAGCGCAGGCTGCAGCTACTGCAGCTGCCATG
Seq C2 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076_MULTIEX1-6/11=C1-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0064219=zf-CCCH=PD(81.5=25.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGATAAGAGGATGCACGG
R:
CTGGTTGGCTGTGGCTGTTG
Band lengths:
286-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]