BtaEX0021577 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014088 | MBNL3
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:15994325-16123773:-
Coord C1 exon
chrX:16123579-16123773
Coord A exon
chrX:16122073-16122309
Coord C2 exon
chrX:15994325-15994400
Length
237 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTTTTTTTAAGGTT
3' ss Score
11.6
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AATTCTTTTCCTGTGAATCCTGCAATTGCAGCTAATCCTGCCATGGCTTACAATCCTTACTTACCTCATCATCCTGGGATGGGCCTGGTCCCCGCCGAACTGGTACAAAACGCACCTGTTCTGATTTCTGGAAACCCACCTCTGCCACTGCCAGGGCCTGTTGGTCCAAAACCGATACGTTCAGATAAACTGGAG
Seq A exon
GTTTGCCGTGAATTTCAGCGAGGTAATTGTACCCGTGGTGAGAATGATTGCCGCTATGCTCACCCTACTGATGTGTCCATGATTGAGACAAGTGATAATACTGTGACCATCTGCATGGATTATATCAAAGGTCGATGCTCCCGGGAGAAATGCAAGTATTTTCATCCTCCTGCGCACTTGCAAGCCAAACTCAAAGCAGCTCATTACCAGATGAACCATTCAGCTGCCACTGCAATG
Seq C2 exon
AGTTTCTGGAGCCATGGTTATTCTCTCAGGGGCATCTTTTCCACTGATGTCACAGCGGCAAGGAAGTGTGTTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014088_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.769 A=0.076 C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.6)
A:
PF0064219=zf-CCCH=PD(81.5=27.8)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTCCTGTGAATCCTGCA
R:
ACACAACACACTTCCTTGCCG
Band lengths:
268-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development