BtaEX0021578 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014088 | MBNL3
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:15994325-16123773:-
Coord C1 exon
chrX:16123579-16123773
Coord A exon
chrX:16118743-16118905
Coord C2 exon
chrX:15994325-15994400
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATCTATCCTTCCCTCACAGGGC
3' ss Score
9.66
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AATTCTTTTCCTGTGAATCCTGCAATTGCAGCTAATCCTGCCATGGCTTACAATCCTTACTTACCTCATCATCCTGGGATGGGCCTGGTCCCCGCCGAACTGGTACAAAACGCACCTGTTCTGATTTCTGGAAACCCACCTCTGCCACTGCCAGGGCCTGTTGGTCCAAAACCGATACGTTCAGATAAACTGGAG
Seq A exon
GGCCTACAGCCTGGTACACTGCAACTGATACCAAAGAGATCGGCACTTGAAAAGGTCAGTTGTGCCCCACCAGTCTTTAATCCCAATGTGTTCCACCGCCAACAGGCTCTGCCTAACGTGCCGATGCCGCAGCCGCAGCCACAGCCGCAGTTCATTCCTACAG
Seq C2 exon
AGTTTCTGGAGCCATGGTTATTCTCTCAGGGGCATCTTTTCCACTGATGTCACAGCGGCAAGGAAGTGTGTTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014088_MULTIEX1-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.769 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.6)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAATCCTGCCATGGCTT
R:
ACACAACACACTTCCTTGCCG
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development