RnoEX6027058 @ rn6
Exon Skipping
Gene
ENSRNOG00000002487 | Mbnl3
Description
muscleblind-like splicing regulator 3 [Source:RGD Symbol;Acc:1565834]
Coordinates
chrX:138388573-138394422:-
Coord C1 exon
chrX:138394183-138394422
Coord A exon
chrX:138392796-138392946
Coord C2 exon
chrX:138388573-138388667
Length
151 bp
Sequences
Splice sites
3' ss Seq
AATTCATCCCTTCTTCATAGGCC
3' ss Score
8.41
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTTGCCGTGAATTTCAGCGTGGAAACTGTACCCGTGGGGAGAGCGAGTGCCGCTATGCTCACCCCACGGATGTTTCCATGATTGAAGTCACTGATAATACTGTGACAATCTGCATGGATTACATTAAAGGCCGATGCTCCCGGGAGAAATGCAAGTACTTTCACCCACCTCCCCACTTGCAGGCCAAACTCAGGGCAGCTCATCACCAGATGAACCATTCCGCTGCTGCCAACGCAATG
Seq A exon
GCCCTGCCGCCTGGTGCACTTCAGCTGATACCAAAGAGGTCAGCCCTTGACAAGGTCAATGGTGCCACTCCAGTCTTTAACCCCAGTGTTTTCCACTGCCAACAGGCTCTGGCTAACATGCAGATTCCGCAGCCGGCTTTCATCCCGACAG
Seq C2 exon
TGCCCATGATGCACGGTGCTACACCTTCCACCATGTCTGCAGCAACACCACCTGCCGGCAACGTTCCCTACGTTCCAACAACTACAGGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002487-'8-9,'8-6,9-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCGTGGAAACTGTACCC
R:
GGTGTAGCACCGTGCATCATG
Band lengths:
252-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]