DreEX6058293 @ danRer10
Exon Skipping
Gene
ENSDARG00000016085 | mbnl3
Description
muscleblind-like splicing regulator 3 [Source:ZFIN;Acc:ZDB-GENE-081002-3]
Coordinates
chr14:30668767-30683801:-
Coord C1 exon
chr14:30683568-30683801
Coord A exon
chr14:30673660-30673810
Coord C2 exon
chr14:30668767-30668802
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTATTATCACTTCAGGCT
3' ss Score
7.42
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTTGTCGAGAGTTTCAGCGGGGAAACTGCACTCGCGGGGAGAACGACTGCCGCTATGCCCATCCAATGGAAGCTGCAATGGTAGACGGCAGCGAGAACTCCGTCATTGTTTGCATGGATTACATCAAGGGCCGCTGCACCCGTGACAAATGCAAGTACTTTCACCCTCCGGCTCACTTACAGGCCCGGATAAAGGCGGCGCAGCACCAAGCCAGTCAGAATGCAGCTGCCATG
Seq A exon
GCTCTGCCACCAGGAGCCATGCAGCAGCTACCAAAGAGACCGACCCTGGAGAAGAGCAACGGCGCTGCTGCCGTCTTCAACCCCAGCATGTTCCACTACCAGCAGGCGTTAGCCAGCATGCAGCTGCAGCAGCCAGCGTTCATTCCCACAG
Seq C2 exon
GCTCCGTTTTCTGCATGGCTCCATCTGGAGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016085-'5-6,'5-5,7-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.016 A=0.422 C2=0.692
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=28.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCGAGAGTTTCAGCGGG
R:
ATGGAGCCATGCAGAAAACGG
Band lengths:
257-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]