HsaEX6053382 @ hg38
Exon Skipping
Gene
ENSG00000076770 | MBNL3
Description
muscleblind like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:132384663-132391083:-
Coord C1 exon
chrX:132390847-132391083
Coord A exon
chrX:132386661-132386811
Coord C2 exon
chrX:132384663-132384698
Length
151 bp
Sequences
Splice sites
3' ss Seq
TACCATCTCTCCCCCCACAGGCC
3' ss Score
12.6
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTTGCCGAGAATTTCAGCGTGGAAATTGTACCCGTGGGGAGAATGATTGCCGCTATGCTCACCCTACTGATGCTTCCATGATTGAAGCGAGTGATAATACTGTGACAATCTGCATGGATTACATCAAAGGTCGATGCTCGCGGGAGAAATGCAAGTACTTTCATCCTCCTGCACACTTGCAAGCCAGACTCAAGGCAGCTCATCATCAGATGAACCATTCAGCTGCCTCTGCCATG
Seq A exon
GCCCTGCAGCCTGGTACACTGCAACTGATACCAAAGAGATCAGCACTGGAAAAGCCCAATGGTGCCACCCCGGTCTTTAATCCCACTGTTTTCCACTGCCAACAGGCTCTGACTAACCTGCAGCTCCCACAGCCGGCATTTATCCCTGCAG
Seq C2 exon
GGCCAATACTGTGCATGGCACCCGCTTCAAATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076770-'19-26,'19-23,21-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.330 A=0.543 C2=0.427
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGTGGAAATTGTACCCG
R:
TATTTGAAGCGGGTGCCATGC
Band lengths:
256-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains