MmuEX6044334 @ mm10
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:51123817-51130341:-
Coord C1 exon
chrX:51130105-51130341
Coord A exon
chrX:51128921-51129071
Coord C2 exon
chrX:51123817-51123911
Length
151 bp
Sequences
Splice sites
3' ss Seq
AATTCATCCCTTCTCCATAGGCC
3' ss Score
10.24
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTTGCCGTGAATTTCAGCGTGGAAATTGTACCCGTGGGGAGAGCGAGTGCCGCTATGCTCACCCTACGGATGTTTCCATGATTGAAGTCACTGATAATTCTGTGACAATCTGCATGGATTACATTAAAGGCCGATGCTCCCGGGAGAAATGCAAGTACTTTCATCCTCCTCCCCACTTGCAGGCCAAACTCAGGGCAGCTCATCACCAGATGAACCATTCTGCTGCCAATGCAATG
Seq A exon
GCCCTGCCGCATGGTGCACTTCAACTGATACCAAAGAGGTCAGCCCTTGACAAGGCCAATGGTGCCACTCCAGTCTTTAACCCCAGTGTTTTCCACTGCCAACAGGCTCTGGCTAACATGCAGATTCCTCAGCAGGCTTTTATCCCAACAG
Seq C2 exon
TGCCCATGATGCACGGTGCTACACCTTCCACTGTGTCTACAGCAACACCACCTGCCAGCAACGTTCCCTACGTTCCAACAACTACAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109_MULTIEX1-3/5=2-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.120 A=0.469 C2=0.953
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGTGGAAATTGTACCCG
R:
GGTGTAGCACCGTGCATCATG
Band lengths:
248-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types