GgaEX6033235 @ galGal3
Exon Skipping
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3497314-3509903:-
Coord C1 exon
chr4:3509667-3509903
Coord A exon
chr4:3501843-3501993
Coord C2 exon
chr4:3497314-3497408
Length
151 bp
Sequences
Splice sites
3' ss Seq
AATGACTCCCTTATCCACAGGCC
3' ss Score
9.04
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTTTGTCGAGAGTTTCAGCGTGGAAATTGCACACGTGGTGAGAACGACTGCCGCTATGCTCACCCGATAGATATTGCGATGATAGACACCAATGAAAATACTGTTACAGTTTGCATGGATTACATCAAAGGTCGATGCTCTAGGGAGAAATGCAAGTACTTTCATCCCCCTGCACACCTGCAAGCCAAAATCAAGGCAGCTCAACATCAGGTGAACCAGACAGCTGCAGCTGCAATG
Seq A exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
Seq C2 exon
TGCCCATGATGCACGGTGCTACGCCCACCACTGTGTCTGCAGCAACAACTCCTGCCACCAGCGTCCCCTTCGCTGCAACAGCTACCGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066-'9-12,'9-8,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.278 A=0.657 C2=0.953
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAACGACTGCCGCTATG
R:
CAGGAGTTGTTGCTGCAGACA
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]