GgaEX6033235 @ galGal4
Exon Skipping
Gene
ENSGALG00000029157 | MBNL3
Description
muscleblind-like 3 isoform 5 [Source:RefSeq peptide;Acc:NP_001156813]
Coordinates
chr4:3482315-3492601:-
Coord C1 exon
chr4:3492365-3492601
Coord A exon
chr4:3484541-3484691
Coord C2 exon
chr4:3482315-3482350
Length
151 bp
Sequences
Splice sites
3' ss Seq
AATGACTCCCTTATCCACAGGCC
3' ss Score
9.04
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTTTGTCGAGAGTTTCAGCGTGGAAATTGCACACGTGGTGAGAACGACTGCCGCTATGCTCACCCGATAGATATTGCGATGATAGACACCAATGAAAATACTGTTACAGTTTGCATGGATTACATCAAAGGTCGATGCTCTAGGGAGAAATGCAAGTACTTTCATCCCCCTGCACACCTGCAAGCCAAAATCAAGGCAGCTCAACATCAGGTGAACCAGACAGCTGCAGCTGCAATG
Seq A exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
Seq C2 exon
GGTCAGTTCTGTGCATGACACCCACTGCAAGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029157-'11-10,'11-7,13-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCGAGAGTTTCAGCGTGG
R:
GTGTCATGCACAGAACTGACC
Band lengths:
256-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]