DreEX6058292 @ danRer10
Exon Skipping
Gene
ENSDARG00000016085 | mbnl3
Description
muscleblind-like splicing regulator 3 [Source:ZFIN;Acc:ZDB-GENE-081002-3]
Coordinates
chr14:30673660-30686421:-
Coord C1 exon
chr14:30686221-30686421
Coord A exon
chr14:30683568-30683801
Coord C2 exon
chr14:30673660-30673810
Length
234 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTGCTTTACTGCCAGGTT
3' ss Score
8.01
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ACCTCTTTTCCAGTAACGCCTTCGTTGGCCAACAGTCCGAGCATGGCTTTCAGCCCGTACCTGAGCCACGTGAGCCCGGGCATCAGTCTCATGCCCGAGCTTCTGCCCAGCGCCCCCGTGCTGGTCCCGGGGAGCCCCACCGGCATCACCATGGGCAACGGAAATTCAACACAGAAACATGTTCGCACAGACAAGCTTGAG
Seq A exon
GTTTGTCGAGAGTTTCAGCGGGGAAACTGCACTCGCGGGGAGAACGACTGCCGCTATGCCCATCCAATGGAAGCTGCAATGGTAGACGGCAGCGAGAACTCCGTCATTGTTTGCATGGATTACATCAAGGGCCGCTGCACCCGTGACAAATGCAAGTACTTTCACCCTCCGGCTCACTTACAGGCCCGGATAAAGGCGGCGCAGCACCAAGCCAGTCAGAATGCAGCTGCCATG
Seq C2 exon
GCTCTGCCACCAGGAGCCATGCAGCAGCTACCAAAGAGACCGACCCTGGAGAAGAGCAACGGCGCTGCTGCCGTCTTCAACCCCAGCATGTTCCACTACCAGCAGGCGTTAGCCAGCATGCAGCTGCAGCAGCCAGCGTTCATTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016085-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.416 A=0.016 C2=0.422
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
PF0064219=zf-CCCH=PD(81.5=28.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTTTCCAGTAACGCCT
R:
GTGGAACATGCTGGGGTTGAA
Band lengths:
297-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]